YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|78609744, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.91
Transmembrane Helix	7	30	0.88
Cytoplasmic	31	46	0.96
Transmembrane Helix	47	68	0.91
Non-Cytoplasmic	69	76	0.71
Transmembrane Helix	77	94	0.95
Cytoplasmic	95	104	0.86
Transmembrane Helix	105	126	0.91
Non-Cytoplasmic	127	135	0.70
Transmembrane Helix	136	155	0.90
Cytoplasmic	156	162	0.73
Transmembrane Helix	163	184	0.90
Non-Cytoplasmic	185	188	0.77
Transmembrane Helix	189	208	0.91
Cytoplasmic	209	214	0.83
Transmembrane Helix	215	234	0.94
Non-Cytoplasmic	235	241	0.75
Transmembrane Helix	242	262	0.95
Cytoplasmic	263	293	0.90
Transmembrane Helix	294	315	0.88
Non-Cytoplasmic	316	321	0.66
Transmembrane Helix	322	342	0.88
Cytoplasmic	343	365	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMPMFRIIVG LFATMLVSAA ITPLVRRLAF VLGAVDKPNA RRVNKKAMPS MGGLAIFIAF  60
   61 NVGTFILLRG QFPTHELFSI FLAECIIIIT GMIDDIKELS PKEKMLGILI AALVIYFLAG 120
  121 VRMNILTIPL VGTFKLGWLS FPITIFWILA ITNAVNLIDG LDGLATGVSI IALFTMGVIA 180
  181 YFFLSITNVS VSIMIFCLGA ALIGFLPHNF HPAKIFLGDT GALFIGFMIA VLSLKGLKNV 240
  241 TFITLLIPVI ILGVPITDTV YAMLRRILNR KPISQADKHH LHHRLMQLGL SHRQTVLVIY 300
  301 GLALVFSLIS LLYPLSTLWG SLVLTIAVLI GLELFVESIG LVGENRQPLL HLLKRLLKPK 360
  361 DEEKD