YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82546751, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSPLFWKM TTLFGAVLLL LIPIMLIRQV IVERADYRSD VEDAIRQSTS GPQKLVGPLI  60
   61 AIPVTELYTV QEEDKTVERK RSFIHFWLPE SLMVDGNQNV EERKIGIYTG QVWHSDLTLK 120
  121 ADFDVSRLSE LNAPNIILGK PFIVISVGDA RGIGVVKAPE VNGTALTIEP GTGLEQGGQG 180
  181 VHIPLPEGDW RKQNLQLNMA LNLSGTGDLS VVPAGRNSEM PLTSNWPHPS FLGDFLPAKR 240
  241 EVSESGFQAQ WQSSWFANNL GERFASGNDT GWENFPAFSV AVTTPADQYQ LTDWATKYAI 300
  301 LLIALTFMAF FVFETLTAQR LHPMQYLLVG LSLVMFYLLL LALSEHIGFT VAWIIASLIG 360
  361 ALMNGIYLQA VLKGWRNSML FTLALLLLDG VMWGLLNSAD SALLLGTSVL VVALAGMMFV 420
  421 TRNIDWYAFS LPKMKASKEV TMDDQLRIWK

Type	Start	End	Confidence
Signal Peptide	1	26	0.77
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	293	0.97
Transmembrane Helix	294	316	0.87
Cytoplasmic	317	323	0.83
Transmembrane Helix	324	343	0.92
Non-Cytoplasmic	344	348	0.80
Transmembrane Helix	349	368	0.94
Cytoplasmic	369	377	0.74
Transmembrane Helix	378	396	0.94
Non-Cytoplasmic	397	402	0.80
Transmembrane Helix	403	424	0.91
Cytoplasmic	425	450	0.95