YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|81248099, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVNCVTASL MYYWSLPALA EQSSSEIKIV RDEYGMPHIY ANDTWHLFYG YGYVVAQDRL  60
   61 FQMEMARRST QGTVAEVLGK DFVKFDKDIR RNYWPDAIRA QIDALSPEDM SILQGYADGM 120
  121 NAWIDKVNTN PETLLPKQFN TFGFTPKRWE PFDVAMIFVG TMANRFSDST SEIDNLALLT 180
  181 ALKDKYGVSQ GMAVFNQLKW LVNPSAPTTI AVQESSYPLK FNQQNSQTAA LLPRYDLPAP 240
  241 MLDRPAKGAD GALLALTAGK NRETIAAQFA QGGANGLAGY PTTSNMWVIG KSKAQDAKAI 300
  301 MVNGPQFGWY APAYTYGIGL HGAGYDVTGN TPFAYPGLVF GHNGVISWGS TAGFGDDVDI 360
  361 FAERLSAEKP GYYLHNCKWV KMLSREETIT VKNGQAETFT VWRTVHGNIL QTDQTTQTAY 420
  421 AKSRAWDGKE VASLLAWTHQ MKAKNWQE

Type	Start	End	Confidence
Signal Peptide	1	20	0.78
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	448	0.99