YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82546360, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISTLQIIA IFLFSCIAGM GSVLDEFQTH RPLIACTVIG LILGDLKTGI ILGGTLELIA  60
   61 LGWMNVGAAQ SPDSALASII SAILVIVGQQ SIATGIAIAL PVAAAGQVLT VFARTITVVF 120
  121 QHAADKAAEE ARFRTLDILH VSAFGVQALR VAIPALIVSL FVSADMVSNM LSAIPEFVTR 180
  181 GLQIAGGFIV VVGYAMVLRM MGVKYLMPFF FLGFLAGGYL DLSLLAFGGV GVIMALVYIQ 240
  241 LNPQWRKAEP QLQATASTAL DQLDD

Type	Start	End	Confidence
Cytoplasmic	1	5	0.50
Transmembrane Helix	6	24	0.91
Non-Cytoplasmic	25	32	0.41
Transmembrane Helix	33	67	0.62
Cytoplasmic	68	75	0.38
Transmembrane Helix	76	110	0.73
Non-Cytoplasmic	111	142	0.54
Transmembrane Helix	143	167	0.75
Cytoplasmic	168	178	0.49
Transmembrane Helix	179	202	0.83
Non-Cytoplasmic	203	214	0.55
Transmembrane Helix	215	239	0.85
Cytoplasmic	240	265	0.63