YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82545957, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLIVLTYV ALAWAVFKIF RIPVNQWTLA TAALGGVFLV SGLILLMNYN HPYTFTAQKA  60
   61 VIAIPITPQV TGIVTEVTDK NNQLIQKGEV LFKLDPVRYQ ARVDRLQADL MTATHNIKTL 120
  121 RAQLTEAQAN TTQVSAERDR LFKNYQRYLK GSQAAVNPFS ERDIDDARQN FLAQDALVKG 180
  181 SVAEQAQIQS QLDSMVNGEQ SQIVSLRAQL TEAKYNLEQT VIRAPSNGYV TQVLIRPGTY 240
  241 AAALPLRPVM VFIPEQKRQI VAQFRQNSLL RLKPGDDAEV VFNALPGQVF HGKLTSILPV 300
  301 VPGGSYQAQG GLQSLTVVPG TDGVQGTIEL DPNDDIDALP DGIYAQVAVY SDHFSHVSVM 360
  361 RKVLLRMTSW MHYLYLDH

Type	Start	End	Confidence
Cytoplasmic	1	26	0.55
Transmembrane Helix	27	49	0.85
Non-Cytoplasmic	50	378	0.76