YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|81246613, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	89	0.98
Transmembrane Helix	90	109	0.94
Non-Cytoplasmic	110	131	0.89
Transmembrane Helix	132	153	0.94
Cytoplasmic	154	163	0.85
Transmembrane Helix	164	185	0.91
Non-Cytoplasmic	186	191	0.80
Transmembrane Helix	192	214	0.93
Cytoplasmic	215	226	0.83
Transmembrane Helix	227	247	0.87
Non-Cytoplasmic	248	263	0.74
Transmembrane Helix	264	286	0.84
Cytoplasmic	287	301	0.88
Transmembrane Helix	302	323	0.88
Non-Cytoplasmic	324	345	0.90
Transmembrane Helix	346	372	0.83
Cytoplasmic	373	390	0.88
Transmembrane Helix	391	414	0.91
Non-Cytoplasmic	415	435	0.89
Transmembrane Helix	436	456	0.95
Cytoplasmic	457	478	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIWEISEKA DYIAQRHRRL QDQWHIYCNS LVQGITLSKA RLHHAMSCAP DKELCFVLFE  60
   61 HFRIYVTLAD GFNSHTIEYY VETKEGKLWF ALGRLGTLLL AIACWLLWQR YGTLDLRLLD 120
  121 MRMQQLPLGS DIWLLGVIGF GLLAGIIPLH GWVPQAHANA SAPAAALFST VVMKIGLLGI 180
  181 LTLSLLGGNA PLWWGIVLLV LGMITAFVGG LYALMEHNIQ RLLAYHTLEN IGIILLGLGA 240
  241 GVTGIALEQP ALIALGLVGG LYHLLNHSLF KSVLFLGAGS VWFRTGHRDI EKLGGIGKKM 300
  301 PVISIAMLVG LMAMAALPPL NGFAGEWVIY QSFFKLSNSG AFVARLLGPL LAVGLAITGA 360
  361 LAVMCMAKVY GVTFLGAPRT KEAENATCAP LLMSVSVVAL AICCVIGGVA APWLLPMLSA 420
  421 AVPLPLEPAN TTVSQPMITL LLIACPLLPF IIMAICKGDR LPSRSRGAAW VCGYDHEK