YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|81245227, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQSTRISMG LFFKYFLSLT KIDPGQNYIS LPSIKSSTHI ALLFMVSMGT QKLKAQSFFI  60
   61 FSLLLTLILF CITTLYNENT NVKLIPQMNY LMVVVALFFL NAVIFLFMLM KYFTNKQILP 120
  121 TLILSLAFLS GLIYLVETIV IIHKPINGST LIQTKSNDVS IFYIFRQLSF ICLTSLALFC 180
  181 YGKDNILDNN KKKTGILLLA LIPFLVFPLL AHNLSSYNAD YSLYVVDYCP DNHTATRGIN 240
  241 YTKILVCLWA FLLFFIIMRT RLASELWPLI ALLCLASLCC NLLLLTLDEY NYTIWYISRG 300
  301 IEVSSKLFVV SFLIYNIFQE LQLSSKLAVH DVLTNIYNRR YFFNSVESLL SRPVVKDFCV 360
  361 MLVDINQFKR INAQWGHRVG DKVLVSIVDI IQQSIRPDDI LARLEGEVFG LLFTELNSAQ 420
  421 AKIIADRIRK NVELLTGFSN RYDVPEQMTI SIGTVFSTGD TRNISLVMTE ADKALREAKS 480
  481 EGGNKVIIHH I

Type	Start	End	Confidence
Cytoplasmic	1	56	0.87
Transmembrane Helix	57	76	0.96
Non-Cytoplasmic	77	89	0.85
Transmembrane Helix	90	110	0.93
Cytoplasmic	111	120	0.77
Transmembrane Helix	121	142	0.93
Non-Cytoplasmic	143	161	0.92
Transmembrane Helix	162	182	0.94
Cytoplasmic	183	193	0.92
Transmembrane Helix	194	214	0.93
Non-Cytoplasmic	215	238	0.93
Transmembrane Helix	239	258	0.92
Cytoplasmic	259	265	0.87
Transmembrane Helix	266	287	0.92
Non-Cytoplasmic	288	295	0.85
Transmembrane Helix	296	318	0.66
Cytoplasmic	319	491	0.75