YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82542985, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEKCRKHAM NSHNITNESL ALALMLVVVA ILISHKEKLA LEKDIFWSVG RAIIQLIIVG  60
   61 YVLKYIFSVD DASLTLLMVL FICFNAAWNA QKRSKYIAKA FISSFIAITV GAGITLAVLI 120
  121 LSGSIEFIPM QVIPIAGMIA GNAMVAVGLC YNNLGQRVIS EQQQIQEKLS LGATPKQASA 180
  181 ILIRDSIRAA LIPTVDSAKT VGLVSLPGMM SGLIFAGIDP VKAIKYQIMV TFMLLSTASL 240
  241 STIIACYLTY RKFYNSRHQL VVTQLKKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.70
Transmembrane Helix	19	35	0.89
Cytoplasmic	36	44	0.75
Transmembrane Helix	45	65	0.78
Non-Cytoplasmic	66	71	0.70
Transmembrane Helix	72	90	0.91
Cytoplasmic	91	99	0.88
Transmembrane Helix	100	121	0.93
Non-Cytoplasmic	122	131	0.71
Transmembrane Helix	132	152	0.93
Cytoplasmic	153	197	0.94
Transmembrane Helix	198	218	0.89
Non-Cytoplasmic	219	227	0.78
Transmembrane Helix	228	250	0.93
Cytoplasmic	251	268	0.96