YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATP6_SHIDS
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASENMTPQD YIGHHLNNLQ LDLRTFSLVD PQNPPATFWT INIDSMFFSV GLGLLFLVLF  60
   61 RSVAKKATSG VPGKFQTAIE LVIGFVNGSV KDMYHGKSKL IAPLALTIFV WVFLMNLMDL 120
  121 LPIDLLPYIA EHVLGLPALR VVPSADVNVT LSMALGVFIL ILFYSIKMKG IGGFTKELTL 180
  181 QPFNHWAFIP VNLILEGVSL LSKPVSLGLR LFGNMYAGEL IFILIAGLLP WWSQWILNVP 240
  241 WAIFHILIIT LQAFIFMVLT IVYLSMASEE H

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.90
Transmembrane Helix	38	60	0.85
Cytoplasmic	61	99	0.86
Transmembrane Helix	100	123	0.83
Non-Cytoplasmic	124	143	0.82
Transmembrane Helix	144	166	0.87
Cytoplasmic	167	211	0.73
Transmembrane Helix	212	233	0.89
Non-Cytoplasmic	234	240	0.69
Transmembrane Helix	241	264	0.92
Cytoplasmic	265	271	0.68