YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|81243167, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQEKTSAV VEETREAVDT TSQPVATEKK SKNNPALILS AVAIAIALAA GVGLYGWGKQ  60
   61 QAVNQTATSD ALANQLTALQ KAQESQKAEL EGIIKQQAAQ LKQANRQQET LAKQLDEVQQ 120
  121 KVATISGSDA KTWLLAQADF LVKLAGRKLW SDQDVTTAAA LLKSADASLA DMNDPSLITV 180
  181 RRAITDDIAS LSAVSQVDYD GIILKLNQLS NQVDNLRLAD NDSDGSPMDS NGEELSSSIS 240
  241 EWRINLQKSW QNFMDNFITI RRRDDTAVPL LAPNQDIYLR ENIRSRLLVA AQAVPRHQQE 300
  301 TYRQALENVS TWVRAYYDTD DATTKAFLDE VDQLSQQNIS MDLPETLQSQ AMLEKLMQTR 360
  361 VRNLLAQPAA GTTEAKPAPA PQADTPAAAP QGE

Type	Start	End	Confidence
Cytoplasmic	1	35	0.97
Transmembrane Helix	36	58	0.92
Non-Cytoplasmic	59	393	0.99