YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82778904, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTSTLKGQ CIAEFLGTGL LIFFGVGCVA ALKVAGASFG QWEISVIWGL GVAMAIYLTA  60
   61 GVSGAHLNPA VTIALWLFAC FDKRKVIPFI VSQVAGAFCA AALVYGLYYN LFFDFEQTHH 120
  121 IVRGSVESVD LAGTFSTYPN PHINFMQAFA VEMVITAILM GLILALTDDG NGVPRGPLAP 180
  181 LLIGLLIAVI GASMGPLTGF AMNPARDFGP KVFAWLAGWG NVAFTGGRDI PYFLVPLFGP 240
  241 IVGAIVGAFA YRKLIGRHLP CDICVVEEKE TTTPSEQKAS L

Type	Start	End	Confidence
Cytoplasmic	1	14	0.88
Transmembrane Helix	15	37	0.89
Non-Cytoplasmic	38	52	0.72
Transmembrane Helix	53	78	0.80
Cytoplasmic	79	85	0.91
Transmembrane Helix	86	109	0.88
Non-Cytoplasmic	110	144	0.96
Transmembrane Helix	145	166	0.93
Cytoplasmic	167	177	0.84
Transmembrane Helix	178	200	0.89
Non-Cytoplasmic	201	229	0.92
Transmembrane Helix	230	251	0.92
Cytoplasmic	252	281	0.96