YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_SHIDS
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.19
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIEKIWSGES PLWRLLLPLS WLYGLVSGAI RLCYKLKLKR AWRAPVPVVV VGNLTAGGNG  60
   61 KTPVVVWLVE QLQQRGIRVG VVSRGYGGKA ESYPLLLSAD TTTAQAGDEP VLIYQRTDAP 120
  121 VAVSPVRSDA VKAILAQHPD VQIIVTDDGL QHYCLARDVE IVVIDGVRRF GNGWWLPAGP 180
  181 MRERAGRLKS IDAVIVNGGV PRSGEIPMHL LPGQAVNLRT GTRCDVAQLE HVVAMAGIGH 240
  241 PPRFFATLKM CGVQPEKCVP LADHQSLNHA DVSALVSTGQ TLVMTEKDAV KCWAFAEENW 300
  301 WYLPVDAQLS GDEPAKLLAQ LTSLASGN

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.55
Transmembrane Helix	15	34	0.59
Cytoplasmic	35	45	0.50
Transmembrane Helix	46	60	0.19
Non-Cytoplasmic	61	328	0.64