YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|81241266, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPCSGNTD CVVTMSIKTI KYFSTIIVAV VAVLAGWWLW NYYMQSPWTR DGKIRVEQVS  60
   61 ITPQVSGRIV RLNIKDNQLV NAGDLLLTID KTPFQIAKLN AQAQLAKAQS DLAKANNEAN 120
  121 RRRHLSQNFI SAEELDTANL NVKAMQASVD AAQATLKQAQ WQLAQTEIRA PVSGWVTNLT 180
  181 TRIGDYADTG KPLFALVDSN SFYVIGYFEE TKLRHIREGA PAQITLYSDN KTLQGHVSSI 240
  241 GRAIYDQSVE SDSSLIPDVK PNVPWVRLAQ RVPVRFALDK VPGDVTLVSG TTCSISVGQ

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	299	0.91