YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|188490559, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQYLNVFFY DIYPYICATV FFLGSWLRYD YGQYTWRASS SQMLDKRGMV IWSNLFHIGI  60
   61 LGIFFGHLFG MLTPHWMYAW FLPVAAKQLM AMVLGGICGV LTLIGGAGLL WRRLTNQRVR 120
  121 ATSTTPDIII MSILLVQCLL GLSTIPFSAQ YPDGSEMMKL VGWAQSIVTF RGGSSEMLNG 180
  181 VAFVFRLHLV LGMTIFLLFP FTRLVHVWSA PFEYFTRRYQ IVRSRR

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.80
Transmembrane Helix	12	29	0.95
Cytoplasmic	30	49	0.92
Transmembrane Helix	50	71	0.93
Non-Cytoplasmic	72	88	0.90
Transmembrane Helix	89	111	0.93
Cytoplasmic	112	127	0.89
Transmembrane Helix	128	148	0.93
Non-Cytoplasmic	149	183	0.91
Transmembrane Helix	184	207	0.87
Cytoplasmic	208	226	0.91