YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82776631, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLSEYGLF LAKIVTVVLA IAAIIVNVAQ RNKRQRGELR VNNLSEQYKE MKEELAEALM  60
   61 DSHQQKQWHK AQKKKHKQEA KAAKAKAKLG EVATDSKPRV WVLDFKGSMD AHEVNSLREE 120
  121 ITAVLAAFKP QDQVVLRLES PGGMVHGYGL ASSQLQRLRD KNIPLTVTVD KVAASGGYMM 180
  181 ACVADKIVSA PFAIVGSIGV VAQMPNFNRF LKSKDIDIEL HTAGQYKRTL TLLGENTEEG 240
  241 REKFREELNE THQLFKDFVK RMRPSLDIEQ VATGEHWYGQ QAVEKGLVDE INTSDEVILS 300
  301 LMEGREVVNV RYMQRKRLID RFTGSAAESA DRLLLRWWQR GQKPLM

Type	Start	End	Confidence
Cytoplasmic	1	8	0.48
Transmembrane Helix	9	29	0.92
Non-Cytoplasmic	30	346	0.64