YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82656322, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDKTKNDQQ ESNEDKDELE LFTRNTSKKR RQRKRSKATH FSNQNKDDTS QQADFDEEIY  60
   61 LINKDFKKEQ SNEENNDSAS SHANDNNIDD STDSNNENED YSYNQEIDDQ NESNGIAVDN 120
  121 EQPQSAPKEQ NSDSNDEETV TKKERKSKVT QLKPLTLEEK RKLRRKRQKR IQYSVITILV 180
  181 LLIAVILIYM FSPLSKIAHV NINGNNHVST SKINKVLGVK NDSRMYTFSK KNAINDLEED 240
  241 PLIKSVEIHK QLPNTLNVDI TENEIIALVK YKGKYLPLLE NGKLLKGSND VKINDAPVMD 300
  301 GFKGTKEDDM IKALSEMTPE VRRYIAEVTY APSKNKQSRI ELFTTDGLQV IGDISTISKK 360
  361 MKYYPQMSQS LSRDSSGKLK TRGYIDLSVG ASFIPYRGNT STQSESDKNV TKSSQEENQA 420
  421 KEELQSVLNK INKQSSKNN

Type	Start	End	Confidence
Cytoplasmic	1	170	0.99
Transmembrane Helix	171	191	0.96
Non-Cytoplasmic	192	439	0.99