YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83721040, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	51	0.98
Transmembrane Helix	52	71	0.95
Non-Cytoplasmic	72	78	0.78
Transmembrane Helix	79	98	0.92
Cytoplasmic	99	111	0.86
Transmembrane Helix	112	133	0.90
Non-Cytoplasmic	134	143	0.70
Transmembrane Helix	144	164	0.89
Cytoplasmic	165	174	0.75
Transmembrane Helix	175	196	0.88
Non-Cytoplasmic	197	210	0.72
Transmembrane Helix	211	231	0.88
Cytoplasmic	232	243	0.85
Transmembrane Helix	244	263	0.87
Non-Cytoplasmic	264	277	0.74
Transmembrane Helix	278	300	0.92
Cytoplasmic	301	326	0.82
Transmembrane Helix	327	352	0.74
Non-Cytoplasmic	353	394	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSSHQSILR MNLPIQSPAA TISDRQPPHR PPRGPWRIHR IRPRPEMARS RFVPDNFTLA  60
   61 LVGTVVLASF LPCRGEAAHA FNWATDIAVG LLFFLHGAKL SREAIIAGAT HWRLHVVVLL 120
  121 STFALFPLLG LALKPVLTPL VTPALYAGVL FLCTLPSTVQ SSIAFTSIAK GNVPAAVCSA 180
  181 SASSLLGIFV TPALVGVMVS TQGTGATASP WSTIGAIVMQ LLVPFLAGQL LRPVIGGWIE 240
  241 RNRGVLRFVD QGSILLVVYV AFSEAVNEGL WHQIPPMALA GLVVVNVVLL AIALAVTTIV 300
  301 SKRLGFNRAD QITIIFCGSK KSLAAGVPMA KVIFAAHAVG AIVLPLMLFH QIQLMTCAAL 360
  361 AQRWGARDTS RERQPGAHGG RAIGSGANAS AAKR