YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83652834, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.50
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDACTALSL CPKKPFCYIT SGFIRSSRGY RHQKQPSARH NKFVILGDLL MKKSLLALVA  60
   61 LSAFAGAAHA QSSVTLYGII DEGFNINTNA GGKHLYNLSS GVLQGSRWGL RGTEDLGGGL 120
  121 KALFVLENGF DVNSGKLNQG GLEFGRQAYV GLSSSFGTVT LGRQYDSVVD FVGPLEAGDQ 180
  181 WGGYIAAHPG DLDNFNNAYR VNNAVKFTSA NYGGFTFGGL YSFGGVAGDF SRNQTWSLGA 240
  241 GYTNGPLVLG VGYLNARTPS TAGGLFGNNT TSSSPAAVTT PVYAGYASAH TYQVIGAGGA 300
  301 YSFGAATVGV TYSNIKFMNF ASTVFPNQTA TFNNAEINFK YQLTPTLLAG AAYDYTQGSK 360
  361 IAGASAAKYH QGSVGVDYFL SKRTDVYAIG VYQHASGNVI EADGNTVGPA TAAINGLTPS 420
  421 SNRNQFTARV GIRHKF

Type	Start	End	Confidence
Cytoplasmic	1	48	0.47
Transmembrane Helix	49	71	0.32
Non-Cytoplasmic	72	436	0.83