YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167617938
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIFRFVKIV FTVIRFGLDE VMLSRIENPR VKFLLRITTI GRRFADPPAV RLRRALESLG  60
   61 PIFVKFGQVL STRRDLLPVD FANELAKLQD QVPPFDSAVA IAIVEKSLGA RIDELFDEFE 120
  121 REPVASASIA QVHFAKLKQG EHKGKAVAVK VLRPNMLPVI DSDLALMRDI ATWAERLWAD 180
  181 GRRLKPREVV AEFDKYLHDE LDLMREAANG SQLRRNFAGL DLLLVPEMFW DYSTPSVLVM 240
  241 ERMTGVPISQ VDTLRAAGVD IPKLAREGVE IFFTQVFRDG FFHADMHPGN IQVSLDPKHF 300
  301 GRYIALDFGI VGALSDFDKN YLAQNFLAFF KRDYHRVATL HLESGWVPPD TRVEELESAI 360
  361 RAVCEPYFDR ALKDISLGQV LMRLFSTSRR FNVEIQPQLV LLQKTMLNVE GLGRSLDPEL 420
  421 DLWKTAKPYL ERWMAEQIGL RGWYERFKVE APQWSKTLPQ LPRLVHQALL SHHEAPRAIS 480
  481 DDLIRQILVE QRRTNRLLQA LLVFGLAVGA GAVIARVLIV IAYGG

Type	Start	End	Confidence
Non-Cytoplasmic	1	499	0.76
Transmembrane Helix	500	520	0.95
Cytoplasmic	521	525	0.60