YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83650976, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAPRRLRAR YFSESRARLS AFPPFRSFDP SIRQSPTHCP LLSSPTPAPP PRCGVMQHQH  60
   61 SSETRSVITS RILRLRLSST SLFPAMPAPV RSARRLFLRL ATLSALVVGF AAPAAHAADE 120
  121 LVVSAAASLT NAFKAVGDAY EKQHPGTKIL FNFGASDVLM QQIAKGAPAD VFASADQKAM 180
  181 DRAAAERVIA DGTRRDFAAN SLVLIVPADS RATFGSLRDL SAPAVKRVAF GDPASVPVGR 240
  241 YTEGALKAAG VWNDVSAKGV LAANVRQSLD YVARGEVEAG FVFGTDAAVM PERVKVALTV 300
  301 PTQTPITYPI AVVKDSRHAA AAQGFVAFVL SPAGQAVLAK YGFRPAANGA SAAN

Type	Start	End	Confidence
Cytoplasmic	1	95	0.76
Transmembrane Helix	96	118	0.69
Non-Cytoplasmic	119	354	0.95