YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83716254, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLRPSKRP ARSTAHLARK DAGVVSEQSA AFERAPVAIA ATATPANVCM HRLCCENSPK  60
   61 TAPHTSNMLA SATIATQPSA SVPGIEMVVY VIDIKRLFIA VTFLRHFIFL DFLHLMQCAI 120
  121 LQSATNNDSL AWRNSSMKKL ALSTLSLALL GAAGAAQAQS SVTLYGVIDT SITYVHGNDG 180
  181 KANNAWQMGS GNLQGARWGL KGTEDLGGGL KAIFQLENGF NSANGALGQG SRMFGRQAFV 240
  241 GVQSDTYGTL TLGRQYDPLV DLVQPVTADN YFGSLFATPG DVDNNDNSLR VNNTVKYTSP 300
  301 VFAGFQFEAL YGFSGIAGSP GTGQTWAAAA AYNNGPVGIG AGYFHASNSA PLSAAGVRTG 360
  361 WGGSSDAIFD GPDNSLFMNN GYATAKSIGI AQVGAQYVFG PFTFGLGYSN AQYKSDSASA 420
  421 FGSTEKYNTG RGFVTYQATS ALLLGLGYIY TKSSGDSNAK YHQVSLGADY SLSKRTDVYL 480
  481 AGAYQHASGT QAGGGDAQAS IGSYGIGGTK SQEMVALGLR HKF

Type	Start	End	Confidence
Cytoplasmic	1	139	0.51
Transmembrane Helix	140	156	0.51
Non-Cytoplasmic	157	523	0.93