YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84784315
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTNPTSNLST VAVLPVCDDV PTAAFTLELK HALNAIGPTL LLTSDIIRAR LGSSALDSIH  60
   61 EYRLSGWLAQ QEDIHRIVLY QTDCTLTPWT VRCIRQADCI LIVGLGDQEP ALGELEQMLE 120
  121 NTAVRALKQL VLLHREDGPS PSRTVEWLNM RSWCSGHLHI KCPRRVFSRR SPAKLREMYE 180
  181 KVFAKSADRH SDFSRLARVL TGNTIALVLG GGGARGCSHI GVIKAMEEAG IPIDMVGGTS 240
  241 IGSFIGALYA EERSAVRTKQ RAREWAKCMN SVFATVLDLT YPITSMFSGS AFNASINKVF 300
  301 QDKQIEDLWL PYFNVTTDIT ASAMRVHTDG SLWRYVRASM TLSGYLPPLC DPKDGNLLMD 360
  361 GGYINNLPAD IARNMGAKTV IAIDVGSQDE TDLCNYGDSL SGWWLLWKRL NPWAEKVKVP 420
  421 DMAEIQSRLA YVSCVRQLEV VKSSSYCEYI RPPIDRFKTM DFGKFDEIYD VGYQHGKVVF 480
  481 DGWSRGDIIE KMVKDRRSAD FYESKRMDVL TYPSAGFTDL AEIISRIEPA KPYPSDGYAD 540
  541 EESDYLTEYE DEGPELSRGE EEAFAPTEWP GAGVTEAED

Type	Start	End	Confidence
Cytoplasmic	1	198	0.64
Transmembrane Helix	199	217	0.59
Non-Cytoplasmic	218	230	0.73
Transmembrane Helix	231	250	0.63
Cytoplasmic	251	270	0.56
Transmembrane Helix	271	287	0.54
Non-Cytoplasmic	288	579	0.92