YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAMP1_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPAQPPAE GTEGAAPGGG PPGPPPNTTS NRRLQQTQAQ VEEVVDIMRV NVDKVLERDQ  60
   61 KLSELDDRAD ALQAGASVFE SSAAKLKRKY WWKNCKMMIM LGAICAIIVV VIVIYIFT

Type	Start	End	Confidence
Cytoplasmic	1	96	0.98
Transmembrane Helix	97	117	0.96
Non-Cytoplasmic	118	118	0.99