YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58696737, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKSEKLTKD KKLASDILKE VADTNNNDSN KVTLLTLESS NKVTLFDIKT ALHERGFGIL  60
   61 IIIFSLPLSV PIPVPPGYTT ILSIPLILFS LQLLFGFDSP WMPSWLERRS FQRSTLALVV 120
  121 EKTSPVLEKI EKFMKPRLSF IFYGPGEKIL AFMMLLCAII IALPLPFTHF LPAIGTTLIS 180
  181 LGIMSKDGFL SILGVLVSLC ALLLTLIVIL KGPQLITGAL SLLKSFTTL

Type	Start	End	Confidence
Cytoplasmic	1	55	0.96
Transmembrane Helix	56	74	0.90
Non-Cytoplasmic	75	80	0.71
Transmembrane Helix	81	102	0.88
Cytoplasmic	103	148	0.91
Transmembrane Helix	149	171	0.87
Non-Cytoplasmic	172	188	0.82
Transmembrane Helix	189	210	0.94
Cytoplasmic	211	229	0.87