YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57505732, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPSQIATDT SYSIFMIFVA FVLVFLNGFF VLSEFSIVKV RRSKLEEMVK EKKPNAKKAL  60
   61 DVTSKLDTYL SACQLGITLS SLALGWIGEP AIAKMLETPL LKLGLNAVLI HTIAFVIAFS 120
  121 IITLLHVVLG ELVPKSIAIA IADKVVLWVA RPLHWFWILF LPCIKIFDIL AALTLKIFGI 180
  181 KPAKEHELTH SEEEIKIIAS ESQKGGVLDE FETEIIRNAV DFSDTVAKEV MTPRKDMICL 240
  241 NKQKSYSENM QIICEHKHTR FPYIDGSKDT ILGMVHIRDI VQNELNTKSE NLDNFVKPLI 300
  301 LVPENLSISK VLVMMNKERS HTALVIDEYG GTAGLLTMED IMEEIIGEIK SEHEEDNYKK 360
  361 LADNIYEFQG RCDIEKVEEL LLITYDEDLE QVTIGGYVFN LLGRLPVVGD RIEDELCYYE 420
  421 VKKMDGNSIE RVKVVKKTKT EESEDQTHSK FFILD

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.72
Transmembrane Helix	12	33	0.90
Cytoplasmic	34	106	0.55
Transmembrane Helix	107	129	0.90
Non-Cytoplasmic	130	152	0.56
Transmembrane Helix	153	178	0.77
Cytoplasmic	179	455	0.59