YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|57020942, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.79
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILTLLFI SGFFSVIFAA EATIPTVNLS LSAPDTPNQL VTTLNIVIVL TILALAPSII  60
   61 FVMTSFLRLI VVFSFLRQAM GTQSMPPNTI LVTLALILTF FIMEPVATKS YNEGIKPYLA 120
  121 EQIGYEEAFA RGVKPFKDFM LKNTREKDLA LFYRIRNLPN PKTIDDVPLT VLVPAFMISE 180
  181 LKTAFEIGFL IYLPFLVIDM VVSSVLMAMG MMMLPPVMIS LPFKLLIFVL VDGWNLLVQR 240
  241 LVESFVT

Type	Start	End	Confidence
Cytoplasmic	1	6	0.66
Transmembrane Helix	7	27	0.72
Non-Cytoplasmic	28	45	0.83
Transmembrane Helix	46	70	0.87
Cytoplasmic	71	86	0.78
Transmembrane Helix	87	107	0.74
Non-Cytoplasmic	108	186	0.76
Transmembrane Helix	187	214	0.75
Cytoplasmic	215	216	0.46
Transmembrane Helix	217	238	0.66
Non-Cytoplasmic	239	247	0.51