YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71030634
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVMLNSGVK VKSAAEVGKR AVQFTRGDEI SKWLMSNKEL VYNKCPSFFQ NSKLEDNDDL  60
   61 ANFVDRLIEK GFMYRAQYQP LEGTLEKSET GSYKRPMWPK RLIRTQKQRF DTVGFYILSY 120
  121 EGSQKWNYLK LSGIIFGIIA MCMFQAWPLY LKLSMWYISV VLLTFLMASI ILRLILFLIM 180
  181 WFCGYDFWLF PNLFDEDLGV VDSFKPLYSF TYRKDNLTMM ACRLLCSILI GVSVYQLGKT 240
  241 HDINDIYKFT KQSFLDVLDW GHQKLAAPPE EASFYKSLGV DLSTEFKEKD PEEPTEEGEE 300
  301 DDYNCLLGCG FKSLDDLVKN CMTDCECMSN LLENSCLKHC PNETVASLTE VKVDICKRYK 360
  361 RKQTAL

Type	Start	End	Confidence
Cytoplasmic	1	127	0.87
Transmembrane Helix	128	149	0.91
Non-Cytoplasmic	150	155	0.70
Transmembrane Helix	156	182	0.82
Cytoplasmic	183	366	0.74