YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68534158, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNPWVLEPA LYWPLTDGSS GLYLCASQVL LPLGLERSLC YPVPLLTFLF LFLVSVKLLP  60
   61 VDCERKTDEF CQARQKAALL ELLHELYNFL AIQAGNFECG NPEKLKSKCI PVLEAQEYIA 120
  121 NVTSSSSSRF KAALTWILSS NKDVGIWLKG EDPSELVTTV DKVVCLESAR PRMGMGCRLS 180
  181 RALLTAVTHV LIFFWCLAFL WGLLILLKYR WRKLEEEEQA MYEMVKKIID VVQDHYVDWE 240
  241 QDMERYPYVG ILHVRDSLIP PQSRRRMKRV WDRAVEFLAS NESRIQTESH RVAGEDMLVW 300
  301 RWTKPSSFSD SER

Type	Start	End	Confidence
Cytoplasmic	1	10	0.74
Transmembrane Helix	11	31	0.66
Non-Cytoplasmic	32	38	0.67
Transmembrane Helix	39	59	0.71
Cytoplasmic	60	181	0.83
Transmembrane Helix	182	205	0.90
Non-Cytoplasmic	206	313	0.82