YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|63701773, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEDVQGLRG LLAIKEVRFR REETRPASSA GRGLLCQWRR AACRAASAVA LRSLCRDRDA  60
   61 GRGFRGSGCG CFSLAWAPGL PGGSLQRPSL LLRDPRPAAT MSRQPERPAM EASKASHQPI 120
  121 KGILKNKTSA ASPPVVPSAE QSRPIVEEEL SKKSQKWDEM NILTTYHPAD KDYGLMKIDE 180
  181 PNTPYHNMIG DDEDAYSDSE GNEVMTPDIL AKKLAAAEGS EPKYRTREQE SGGEEDNDLS 240
  241 PEEREKKRQF EMKRKLHYNE GLNIKLARQL ISKDLHDDDE DEEMAETADG ESMNVEESSQ 300
  301 GSTTSDHLQH KSQSS

Type	Start	End	Confidence
Cytoplasmic	1	61	0.54
Transmembrane Helix	62	80	0.52
Non-Cytoplasmic	81	315	0.99