YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82954014
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.95
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	581	0.99
Transmembrane Helix	582	605	0.93
Cytoplasmic	606	618	0.95
Transmembrane Helix	619	640	0.94
Non-Cytoplasmic	641	653	0.83
Transmembrane Helix	654	676	0.89
Cytoplasmic	677	695	0.84
Transmembrane Helix	696	715	0.95
Non-Cytoplasmic	716	740	0.94
Transmembrane Helix	741	764	0.90
Cytoplasmic	765	775	0.85
Transmembrane Helix	776	795	0.94
Non-Cytoplasmic	796	807	0.80
Transmembrane Helix	808	830	0.89
Cytoplasmic	831	848	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLCAFTIS FLFLKFSLIL CCLTEASCFW RIKNSEDNDG DLQRECHFYL GAVDKPIEDN  60
   61 FYNSLLKFRI AASEYEFLLV MFFATDEINK NPYLLPNITL MFSIIGGNCH DLLRGLDQAY 120
  121 TQINGHMNFV NYFCYLDDSC AIGLTGPSWK TSLKLAMHSS MPLVFFGSFN PNLHDHDRLH 180
  181 HVHQVATKDT HLSHGIVSLM FHFRWTWIGL VISDDDKGIQ FLSDLREESQ RHGICLAFVN 240
  241 MIPENMQIYM TRATIYDKQI MTSLAKVVII YGEMNSTLEV SFRRWENLGA RRIWITTSQW 300
  301 DVITNKKEFT LNLFHGTITF AHRRFEIPKF KKFMQTMNTA KYPVDISHTI LEWNYFNCSI 360
  361 SKNSSKMDHI TFNNTLEWTA LHNYDMVMSD EGYNLYNAVY AVAHTYHEHI FQQVESQKKA 420
  421 KPKRFFTVCQ QVSSLMKTRV FTNPVGELVN MKHRENQCTE YDIFLIWNFP QGLGLKVKIG 480
  481 SYLPCFPQRQ ELHISDDLEW AMGGTSVPSS VCSVACTAGF RKIHQKETAD CCFDCVQCPE 540
  541 NEVSNETDME QCVKCPYDKY ANIEKTHCLS RAVSFLAYED PLGIALGCIA LSFSAITILV 600
  601 LITFLKYKDT PIVKANNRIL SYILLISLVF CFLCSLLFIG HPNQVSCVLQ QTTFGVFFTV 660
  661 SVSTVLAKTI TVVMAFKLTT PGRRMREMLV TGAPKLVIPI CTLIQFVLCG IWLITSPPFI 720
  721 DRDIQSEHGK IVILCNKGSV IAFHVVLGYL GSLALGSFTL AFLARNLPDT FNEAKFLTFS 780
  781 MLVFCSVWIT FLPVYHSTRG KVMVVVEVFS ILASSAGLLM CIFVPKCYVI LVRPDSNFIR 840
  841 KYKDKFRY