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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: APOB_MOUSE
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPRKPALRT PLLLLFLLLF LDTSVWAQDE VLENLSFSCP KDATRFKHLR KYVYNYEAES  60
   61 SSGVQGTADS RSATKINCKV ELEVPQICGF IMRTNQCTLK EVYGFNPEGK ALMKKTKNSE 120
  121 EFAAAMSRYE LKLAIPEGKQ IVLYPDKDEP KYILNIKRGI ISALLVPPET EEDQQELFLD 180
  181 TVYGNCSTQV TVNSRKGTVP TEMSTERNLQ QCDGFQPIST SVSPLALIKG LVHPLSTLIS 240
  241 SSQTCQYTLD PKRKHVSEAV CDEQHLFLPF SYKNKYGIMT RVTQKLSLED TPKINSRFFS 300
  301 EGTNRMGLAF ESTKSTSSPK QADAVLKTLQ ELKKLSISEQ NAQRANLFNK LVTELRGLTG 360
  361 EAITSLLPQL IEVSSPITLQ ALVQCGQPQC YTHILQWLKT EKAHPLLVDI VTYLMALIPN 420
  421 PSTQRLQEIF NTAKEQQSRA TLYALSHAVN SYFDVDHSRS PVLQDIAGYL LKQIDNECTG 480
  481 NEDHTFLILR VIGNMGRTME QVMPALKSSV LSCVRSTKPS LLIQKAALQA LRKMELEDEV 540
  541 RTILFDTFVN GVAPVEKRLA AYLLLMKNPS SSDINKIAQL LQWEQSEQVK NFVASHIANI 600
  601 LNSEELYVQD LKVLIKNALE NSQFPTIMDF RKFSRNYQIS KSASLPMFDP VSVKIEGNLI 660
  661 FDPSSYLPRE SLLKTTLTVF GLASLDLFEI GLEGKGFEPT LEALFGKQGF FPDSVNKALY 720
  721 WVNGRVPDGV SKVLVDHFGY TTDGKHEQDM VNGIMPIVDK LIKDLKSKEI PEARAYLRIL 780
  781 GKELSFVRLQ DLQVLGKLLL SGAQTLQGIP QMVVQAIREG SKNDLFLHYI FMDNAFELPT 840
  841 GAGLQLQVSS SGVFTPGIKA GVRLELANIQ AELVAKPSVS LEFVTNMGII IPDFAKSSVQ 900
  901 MNTNFFHESG LEARVALKAG QLKVIIPSPK RPVKLFSGSN TLHLVSTTKT EVIPPLVENR 960
  961 QSWSTCKPLF TGMNYCTTGA YSNASSTESA SYYPLTGDTR YELELRPTGE VEQYSATATY1020
 1021 ELLKEDKSLV DTLKFLVQAE GVQQSEATVL FKYNRRSRTL SSEVLIPGFD VNFGTILRVN1080
 1081 DESAKDKNTY KLILDIQNKK ITEVSLVGHL SYDKKGDGKI KGVVSIPRLQ AEARSEVHTH1140
 1141 WSSTKLLFQM DSSATAYGST ISKRVTWRYD NEIIEFDWNT GTNVDTKKVA SNFPVDLSHY1200
 1201 PRMLHEYANG LLDHRVPQTD VTFRDMGSKL IVATNTWLQM ATRGLPYPQT LQDHLNSLSE1260
 1261 LNLLKMGLSD FHIPDNLFLK TDGRVKYTMN RNKINIDIPL PLGGKSSKDL KMPESVRTPA1320
 1321 LNFKSVGFHL PSREVQVPTF TIPKTHQLQV PLLGVLDLST NVYSNLYNWS ASYTGGNTSR1380
 1381 DHFSLQAQYR MKTDSVVDLF SYSVQGSGET TYDSKNTFTL SCDGSLHHKF LDSKFKVSHV1440
 1441 EKFGNSPVSK GLLTFETSSA LGPQMSATVH LDSKKKQHLY VKDIKVDGQF RASSFYAQGK1500
 1501 YGLSCERDVT TGQLSGESNM RFNSTYFQGT NQIVGMYQDG ALSITSTSDL QDGIFKNTAS1560
 1561 LKYENYELTL KSDSSGQYEN FAASNKLDVT FSTQSALLRS EHQANYKSLR LVTLLSGSLT1620
 1621 SQGVELNADI LGTDKINTGA HKATLKIARD GLSTSATTNL KYSPLLLENE LNAELGLSGA1680
 1681 SMKLSTNGRF KEHHAKFSLD GRAALTEVSL GSIYQAMILG ADSKNIFNFK LSREGLRLSN1740
 1741 DLMGSYAEMK LDHTHSLNIA GLSLDFFSKM DNIYSGDKFY KQNFNLQLQP YSFITTLSND1800
 1801 LRYGALDLTN NGRFRLEPLK LNVGGNFKGT YQNNELKHIY TISYTDLVVA SYRADTVAKV1860
 1861 QGVEFSHRLN ADIEGLTSSV DVTTSYNSDP LHFNNVFHFS LAPFTLGIDT HTSGDGKLSF1920
 1921 WGEHTGQLYS KFLLKAEPLA LIVSHDYKGS TSHSLPYESS ISTALEHTVS ALLTPAEQTS1980
 1981 TWKFKTKLND KVYSQDFEAY NTKDKIGVEL SGRADLSGLY SPIKLPFFYS EPVNVLNGLE2040
 2041 VNDAVDKPQE FTIIAVVKYD KNQDVHTINL PFFKSLPDYL ERNRRGMISL LEAMRGELQR2100
 2101 LSVDQFVRKY RAALSRLPQQ IHHYLNASDW ERQVAGAKEK ITSFMENYRI TDNDVLIAID2160
 2161 SAKINFNEKL SQLETYAIQF DQYIKDNYDP HDLKRTIAEI IDRIIEKLKI LDEQYHIRVN2220
 2221 LAKSIHNLYL FVENVDLNQV SSSNTSWIQN VDSNYQVRIQ IQEKLQQLRT QIQNIDIQQL2280
 2281 AAEVKRQMDA IDVTMHLDQL RTAILFQRIS DIIDRVKYFV MNLIEDFKVT EKINTFRVIV2340
 2341 RELIEKYEVD QHIQVLMDKS VELAHRYSLS EPLQKLSNVL QRIEIKDYYE KLVGFIDDTV2400
 2401 EWLKALSFKN TIEELNRLTD MLVKKLKAFD YHQFVDKTNS KIREMTQRIN AEIQALKLPQ2460
 2461 KMEALKLLVE DFKTTVSNSL ERLKDTKVTV VIDWLQDILT QMKDHFQDTL EDVRDRIYQM2520
 2521 DIQRELEHFL SLVNQVYSTL VTYMSDWWTL TAKNITDFAE QYSIQNWAES IKVLVEQGFI2580
 2581 VPEMQTFLWT MPAFEVSLRA LQEGNFQTPV FIVPLTDLRI PSIRINFKML KNIKIPLRFS2640
 2641 TPEFTLLNTF HVHSFTIDLL EIKAKIIRTI DQILSSELQW PLPEMYLRDL DVVNIPLARL2700
 2701 TLPDFHVPEI TIPEFTIPNV NLKDLHVPDL HIPEFQLPHL SHTIEIPAFG KLHSILKIQS2760
 2761 PLFILDANAN IQNVTTSGNK AEIVASVTAK GESQFEALNF DFQAQAQFLE LNPHPPVLKE2820
 2821 SMNFSSKHVR MEHEGEIVFD GKAIEGKSDT VASLHTEKNE VEFNNGMTVK VNNQLTLDSH2880
 2881 TKYFHKLSVP RLDFSSKASL NNEIKTLLEA GHVALTSSGT GSWNWACPNF SDEGIHSSQI2940
 2941 SFTVDGPIAF VGLSNNINGK HLRVIQKLTY ESGFLNYSKF EVESKVESQH VGSSILTANG3000
 3001 RALLKDAKAE MTGEHNANLN GKVIGTLKNS LFFSAQPFEI TASTNNEGNL KVGFPLKLTG3060
 3061 KIDFLNNYAL FLSPRAQQAS WQASTRFNQY KYNQNFSAIN NEHNIEASIG MNGDANLDFL3120
 3121 NIPLTIPEIN LPYTEFKTPL LKDFSIWEET GLKEFLKTTK QSFDLSVKAQ YKKNSDKHSI3180
 3181 VVPLGMFYEF ILNNVNSWDR KFEKVRNNAL HFLTTSYNEA KIKVDKYKTE NSLNQPSGTF3240
 3241 QNHGYTIPVV NIEVSPFAVE TLASSHVIPT AISTPSVTIP GPNIMVPSYK LVLPPLELPV3300
 3301 FHGPGNLFKF FLPDFKGFNT IDNIYIPAMG NFTYDFSFKS SVITLNTNAG LYNQSDIVAH3360
 3361 FLSSSSFVTD ALQYKLEGTS RLMRKRGLKL ATAVSLTNKF VKGSHDSTIS LTKKNMEASV3420
 3421 RTTANLHAPI FSMNFKQELN GNTKSKPTVS SSIELNYDFN SSKLHSTATG GIDHKFSLES3480
 3481 LTSYFSIESF TKGNIKSSFL SQEYSGSVAN EANVYLNSKG TRSSVRLQGA SKVDGIWNVE3540
 3541 VGENFAGEAT LQRIYTTWEH NMKNHLQVYS YFFTKGKQTC RATLELSPWT MSTLLQVHVS3600
 3601 QLSSLLDLHH FDQEVILKAN TKNQKISWKG GVQVESRVLQ HNAQFSNDQE EIRLDLAGSL3660
 3661 DGQLWDLEAI FLPVYGKSLQ ELLQMDGKRQ YLQASTSLLY TKNPNGYLLS LPVQELADRF3720
 3721 IIPGIKLNDF SGVKIYKKLS TSPFALNLTM LPKVKFPGID LLTQYSTPEG SSVPIFEATI3780
 3781 PEIHLTVSQF TLPKSLPVGN TVFDLNKLAN MIADVDLPSV TLPEQTIVIP PLEFSVPAGI3840
 3841 FIPFFGELTA RAGMASPLYN VTWSAGWKTK ADHVETFLDS MCTSTLQFLE YALKVVETHK3900
 3901 IEEDLLTYNI KGTLQHCDFN VEYNEDGLFK GLWDWQGEAH LDITSPALTD FHLYYKEDKT3960
 3961 SLSASAASST IGTVGLDSST DDQSVELNVY FHPQSPPEKK LSIFKTEWRY KESDGERYIK4020
 4021 INWEEEAASR LLGSLKSNVP KASKAIYDYA NKYHLEYVSS ELRKSLQVNA EHARRMVDEM4080
 4081 NMSFQRVARD TYQNLYEEML AQKSLSIPEN LKKRVLDSIV HVTQKYHMAV MWLMDSFIHF4140
 4141 LKFNRVQFPG YAGTYTVDEL YTIVMKETKK SLSQLFNGLG NLLSYVQNQV EKSRLINDIT4200
 4201 FKCPFFSKPC KLKDLILIFR EELNILSNIG QQDIKFTTIL SSLQGFLERV LDIIEEQIKC4260
 4261 LKDNESTCVA DHINMVFKIQ VPYAFKSLRE DIYFVLGEFN DFLQSILQEG SYKLQQVHQY4320
 4321 MKALREEYFD PSMVGWTVKY YEIEENMVEL IKTLLVSFRD VYSEYSVTAA DFASKMSTQV4380
 4381 EQFVSRDIRE YLSMLTDING KWMEKIAELS IVAKETMKSW VTAVAKIMSD YPQQFHSNLQ4440
 4441 DFSDQLSSYY EKFVGESTRL IDLSIQNYHV FLRYITELLR KLQVATANNV SPYIKLAQGE4500
 4501 LMITF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle