YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60832128
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGCAARAPP GSEARLSLAT FLLGASVLAL PLLTRAGLQG RTGLALYVAG LNALLLLLYR  60
   61 PPRYQIAIRA CFLGFVFGCG TLLSFSQSSW SHFGWYMCSL SLFHYSEYLV TAVNNPKSLS 120
  121 LDSFLLNHSL EYTVAALSSW LEFTLENIFW PELKQITWLS VTGLLMVVFG ECLRKAAMFT 180
  181 AGSNFNHVVQ NEKSDTHTLV TSGVYAWFRH PSYVGWFYWS IGTQVMLCNP ICGVSYALTV 240
  241 WRFFRDRTEE EEISLIHFFG EEYLEYKKRV PTGLPFIKGV KVDLD

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	34	0.94
Non-Cytoplasmic	35	42	0.66
Transmembrane Helix	43	59	0.96
Cytoplasmic	60	65	0.84
Transmembrane Helix	66	87	0.87
Non-Cytoplasmic	88	127	0.77
Transmembrane Helix	128	145	0.61
Cytoplasmic	146	155	0.58
Transmembrane Helix	156	178	0.80
Non-Cytoplasmic	179	215	0.82
Transmembrane Helix	216	239	0.86
Cytoplasmic	240	285	0.88