YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60826783
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRQKELVSR CGEMLHIRYR LLRQALAECL GTLILVMFGC GSVAQVVLSR GTHGGFLTIN  60
   61 LAFGFAVTLG ILIAGQVSGA HLNPAVTFAM CFLAREPWIK LPIYTLAQTL GAFLGAGIVF 120
  121 GLYYDAIWHF ADNQLFASGP NGTAGIFATY PSGHLDMING FFDQFIGTAS LIVCVLAIVD 180
  181 PYNNPVPRGL EAFTVGLVVL VIGTSMGFNS GYAVNPARDF GPRLFTALAG WGSAVFTTGQ 240
  241 HWWWVPIVSP LLGSIAGVFV YQLMIGCHLE QPPPSNEEEN VKLAHVKHKE QID

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	47	0.82
Non-Cytoplasmic	48	60	0.72
Transmembrane Helix	61	82	0.85
Cytoplasmic	83	102	0.79
Transmembrane Helix	103	124	0.91
Non-Cytoplasmic	125	159	0.66
Transmembrane Helix	160	182	0.85
Cytoplasmic	183	191	0.49
Transmembrane Helix	192	213	0.90
Non-Cytoplasmic	214	240	0.49
Transmembrane Helix	241	265	0.78
Cytoplasmic	266	293	0.79