YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84355832
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.95
Transmembrane Helix	8	28	0.89
Non-Cytoplasmic	29	32	0.72
Transmembrane Helix	33	54	0.92
Cytoplasmic	55	74	0.95
Transmembrane Helix	75	96	0.94
Non-Cytoplasmic	97	101	0.88
Transmembrane Helix	102	122	0.94
Cytoplasmic	123	129	0.88
Transmembrane Helix	130	149	0.96
Non-Cytoplasmic	150	155	0.83
Transmembrane Helix	156	177	0.94
Cytoplasmic	178	197	0.97
Transmembrane Helix	198	219	0.92
Non-Cytoplasmic	220	224	0.80
Transmembrane Helix	225	245	0.93
Cytoplasmic	246	256	0.96
Transmembrane Helix	257	278	0.88
Non-Cytoplasmic	279	284	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTKPRVTQ LAVFCAVIGM FLATPGMVPW HVLIGGTVGI WLLAGAAFAI NCLVEQKIDA  60
   61 MMRRTAWRPS ARGEITTPQI LLFSAVLGSV GAWTLYTFTN PLTMWLTIAT FVGYAVIYTL 120
  121 LLKPMTPQNI VIGGASGAMP PALGWAAVTG AVPGDAWILV LIIFVWTPPH FWVLALYRRK 180
  181 DYENAGLPML PVTHGEKFTR LHILLYTVIL FAVTLMPFIS GMSGAVYLTS AVLLGAVFLA 240
  241 YAWKIHRDYS DELARKAFRY SIVYLSLLFA ALLVDHYARP LLGV