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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PTPRQ_MOUSE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFLFFFLFS LIGTSESQVD VSGSFDDTVY DITLSSISAT TYSSPVSRTL ATNVSKPGPP  60
   61 VFLAGERVGS AGILLSWNTP PNPNGRIISY VVKYKEVCPW MQTAYTRVRA KPDSLEVLLT 120
  121 NLNPGTTYEI KVAAENSAGI GVFSDPFLFQ TAESAPGKVV NLTVEALNYS AVNLIWYLPR 180
  181 QPNGKITSFK ISVKHARSGI VVKDVSIKVE DLLSGKLPEC NENSDSFLWS TTSPSPTLSR 240
  241 ATPPLRTTHL SNTLARNKIS SVWKEPISFV VTHLRPYTTY LFEVSAVTTE AGYIDSTIVR 300
  301 TPESVPEGPP QNCITGNVTG KAFSISWDPP AIVTGKFSYR VELYGPTGRI LDNSTKDLRF 360
  361 VFTHLTPFTM YDVYVAAETS AGVGPKSNLS VFTPPDVPGA VFDLQIVEVE ATEIRVSWRK 420
  421 PRQPNGIISQ YRVKVSVLES GVILENTLLT GQDEYINNPM TPEIMNLVDP MIGFYEGSGE 480
  481 MSSDLHSLAS FIYNSHPHDF PARTRVEDQR SPVVATRNQY MTDIAAEHLS YVIRRLVPFT 540
  541 EHTISVSAFT VMGEGPPTVL TVRTREQVPS SIQIINYKNI SSSSILLYWD PPEYPNGKIT 600
  601 HYTIYAMELD TNRAFQMTTV DNSFLITGLK KYTRYKMRVA ASTHVGESSL SEENDLFVRT 660
  661 PEDEPESSPQ DVKVTDVSPS ELSLTWSPPE KPNGIIIAYE VFYQNADALF VKNTSTTNIT 720
  721 LSDLKPYTLY NISIQSYTRL GHGNQSSSLL SVRTSETVPD SAPENITYKN ISSEEIEIFF 780
  781 LPPRSPNGII QKYTIYLKRS NSHEARTIET TSLTLTIGGL KKYTHYVIEV SASTLKGEGV 840
  841 RSMPISILTE EDAPDSPPQN FSVKQLSGVT VMLSWQPPLE PNGIILYYTV YVWDKVSLKT 900
  901 INATEVSLEL SDLDYHADYS AYVTASTRFG DGKTRSSVIN FRTPEGEPSD PPKDVHYVNL 960
  961 SSSSIILFWT PPVKPNGIIQ YYSVYYQNTS STFVQNFTLL EVTQEPGNVT VSARIYKLAV1020
 1021 FSYYTFWLTA STLVGNGNKS SDVIHVYTDQ DIPEGGVGNL TYESLSSTAI NVSWTPPSQP1080
 1081 NGLVFYYVSL NLQQSPPRHR RPPLTTYENS IYFDNLEKYT DYIFKITPST EKGFSETYTA1140
 1141 QLHIKTEEDV PDTPPIINTF KNLSSTSILL SWDPPLKPNG AILSYHLTLQ GTHANRTFVT1200
 1201 SGNHIVLEEL SPFTLYSFLA AARTMKGLGP SSILFFYTDE SAPLAPPQNL TLINYTSDFV1260
 1261 WLTWSPSPLP GGIVKVYSFK IHEHETDTVF YKNISGFQTD AKLAGLEPVS TYSISVSAFT1320
 1321 KVGNGNQFSN VVKFTTQESV PDAVQNIACV ARDWQSVSVM WDPPRKANGI IIHYMITVEG1380
 1381 NSTKVSPRDP MYTFTKLLAN TSYIFEVRAS TSAGEGNESQ CNVSTLPETV PSVPTNTAFS1440
 1441 NVQSTSVTLR WIKPDTILGY FQNYKITTQL RAQKCREWEP EECVEHQEVQ YLYEANQTED1500
 1501 TVRGLKKFQW YRFQVAASTN AGYGNASSWI STQTLPGPPD GPPENVRVVA TSPFGINISW1560
 1561 NEPAIITGPT FYLIDVKSVD NDNFNISFVK SNEENKTTEI NDLEVFTRYS VVITAFVGNV1620
 1621 SGAYTDGKSS AEVIITTLES VPKDPPNNMT FQKIPDEVTK FQLSFLPPSQ PNGNIQVYQA1680
 1681 LVYREDDPTA VQIHNLSIIQ KTDTSVIAML EGLKGGHTYN ISVYAINSAG AGPKVQMRIT1740
 1741 MDIKAPARPK TKPIPIHDAT GKLLVTSTTI TIRMPICYYN DDHGPIRNVQ VLVAEAGAQQ1800
 1801 DGNVTKWYDA YFNKARPYFT NEGFPNPPCI EGKTKFSGNE EIYVIGADNA CMIPGNEEKI1860
 1861 CNGPLKPKKQ YLFKFRATNV MGQFTDSEYS DPIKTLGEGL SERTVEIILS VTLCILSIIL1920
 1921 LGTAIFAFAR IRQKQKEGGT YSPRDAEIID TKFKLDQLIT VADLELKDER LTRLLSYRKS1980
 1981 IKPVSKKSFL QHVEELCTNN NLKFQEEFSE LPKFLQDLSS TDADLPWNRA KNRFPNIKPY2040
 2041 NNNRVKLIAD VSIPGSDYIN ASYVSGYLCP NEFIATQGPL PGTVGDFWRM VWETRAKTLV2100
 2101 MLTQCFEKGR IRCHQYWPED NKPVTVFGDI LITKLMEDIQ IDWTIRDLKI ERHGDCMTVR2160
 2161 QCNFTGWPEH GVPENTTPLI HFVKLVRTSR AHDATPMVVH CSAGVGRTGV FIALDHLTQH2220
 2221 IHDHDFVDIY GLVAELRSER MCMVQNLAQY IFLHQCILDL LSNKGGHQPV CFVNYSTLQK2280
 2281 MDSLDAMEGD VELEWEETTM 

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