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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|82930055
Protein type: Transmembrane
Type Confidence: 0.58
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGEKAQWL RMSRGWNSGV GCSAGIFMAG PGPTGDEGLL TTNHDKVVCD RNLYSKLLLG  60
   61 AGSRTCACAP APSPHAGFAS SVLCLEERGG SRVAASWVLA APAMGKTVAS LGQGTRPDPV 120
  121 RSFNRWKKKH SHRQHQKKER RKQLKKPEWQ VEREGISRLM QNYEKINVNE ITRFSDFPLS 180
  181 KKTLKGLQEA QYRLVTEIQK QTIGLALQGK DVLGAAKTGS GKTLAFLVPV LEALYRLQWT 240
  241 STDGLGVLII SPTRELAYQT FEVLRKVGKN HDFSAGLIIG GKDLKHEAER INNINILVCT 300
  301 PGRLLQHMDE TICFHATNLQ MLVLDEADRI LDMGFADTMN AIIENLPKKR QTLLFSATQT 360
  361 KSVKDLARLS LKDPEYVWVH EKAKYSTPAT LEQNYIICEL HQKISVLFSF LRSHLKKKSI 420
  421 VFFSSCKEVQ YLYRVFCRLR PGISILALHG RQQQMRRMEV YNEFVRKRAA VLFATDIAAR 480
  481 GLDFPAVNWV LQFDCPEDAN TYIHRAGRTA RYKEDGEALL ILLPSEEQGM VQQLLQKKVP 540
  541 VKEIKINPEK LIDVQKKLES FLAQDQDLKE RAQRCFVSYI RSVYLMKDKE VFNVSKLPIT 600
  601 EYALSLGLAV APRIRFLQKL EKQPSTELVK NPVTEAVPPR APSLPNDEAD ESPAYVSEKM 660
  661 SVLHKSGERL EETEHRLASG DGDEEQDEET EDEETEDHLG KAREPHTESV VSIEEAQKVK 720
  721 EVSVQFLNRD DDDEDGPDAD FLTVKRRDVF GLDLKENEAL SKKEPSKSSV KKKLTKVAEA 780
  781 KKVMKRSFKV NKKITFTDEG ELVQQWPQIQ KCAIKDVEEE DDTGGINLDK AKERLQEEDK 840
  841 FDKEEYRKKI KAKHRERRLK EREARREANK RQAKARDEEE AFLDWSDEDD GGFDPSTLPD 900
  901 PDKHRSSEES ESEDTNHKMS DTKKKQETRK RNNTEDDDVR PRSRHGKKAK WETVEPLDTG 960
  961 LSLAEDEELV LHLLKSQN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle