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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|94386883, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.89
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHCMGTKPP SCIILLLLKL FATVSQGLPG TGPLGFHFTH STYNATVYEN SAARTYVNSQ  60
   61 SRMGITLIDL SWDIKYRIVS GDEEGFFKAE EVIIADFCFL RIRTKGGNSA ILNREIQDNY 120
  121 LLIIKGSVRG EDLEAWTKVN IQVLDMNDLR PLFSPTTYSV TIAESTPLRT SVAQVTATDA 180
  181 DIGSNGEFYY YFKNKVDLFS VHPTSGVISL SGRLNYDEKN RYDLEILAVD RGMKLYGNNG 240
  241 VSSTAKLYVH IERINEHAPI IHVVSHTPFS LDKEPTYAVV TVDDLDEGAN GEIESLSIVD 300
  301 GDPLEQFFLA KEGKWLNEYK VKERRQVDWE SFSYGYNLTI QAKDKGSPQK FSELKTVHIA 360
  361 NPRRDNTPVR FEKDVYEVSI SEFSPPGVLV AIVKVSPEPL DVEYKLLPGK DSDYFKINPR 420
  421 SGLIVTAQPL NTVKKEVYKL EVSDKEGDAK AQVTIGIEDA NDHTPEFQEA LYETFVNESV 480
  481 RVGTNVLTVS ASDKDKGENG YITYSIASLN LLPFAINQFT GVISTTEELD FESSPETYRF 540
  541 IVRASDWGSP YRHESEVNVT IRVGNVNDNS PLFEKVACQG VISYDFPVGG HITAISAIDI 600
  601 DELELVKYKI ISGNELGFFY LNPDSGVLQL KKSLMNSGIK NGNFALRITA TDGENFADPM 660
  661 AINISVLHGK VSSKSFSCRE TRVAQKLAEK LLIKAKANGK LNLEDGFLDF YSINRQGPHF 720
  721 DKSFPSDVAV KEDMLVGTNI LKIKAYDADS GFNGKVLFTI SDGNTDSCFN IDMETGQLKV 780
  781 LMPMDREHTD LYVLNITIYD LGKPQKSSWR LLTVNVEDAN DNNPVFLQDS YSVSILESSS 840
  841 IGTEIIQVEA RDKDLGSNGE VMYSVLTDTH QFIINSSTGI VYIADQLDRE SKANYSLKIE 900
  901 ARDKAESGQQ LFSVVTLKIF LDDVNDCSPA FIPSSYSVKV LEDLPVGTVI AWLETQDPDL 960
  961 GLGGQVRYSL VNDYNGRFEV DKASGAIRLS KELDYEKQQF YNLTVRAKDK GRPVSLSSVS1020
 1021 FVEVEVVDVN ENLHTPYFPD FAVVGSVKEN SRIGTSVLQV TAHDEDSGRD GEIQYSIRDG1080
 1081 SGLGRFNIDD ESGVITAADS LDRETTASYW LTVYATDRGV VPLYSTIEVY IEVEDVNDNA1140
 1141 PLTSEPIYYP VVMENSPKDV SVIQIQAEDP DSGSNEKLTY RITSGNPQNF FAINIKTGLI1200
 1201 TTTSRKLDRE QQAEHFLEVT VTDGGSSPKQ STIWVVVQVL DENDNRPQFP EKVYQIKLPE1260
 1261 RDRKKRGEPI YRAFAFDKDE GPNAEISYSI VDGNDDGKFF IDPKTGMVSS RKQFTAGSYD1320
 1321 ILTIKAVDNG RPQKSSTARL HIEWIKKPPP SPIPLTFDEP FYNFTVMESD KVTEIVGVVS1380
 1381 VQPANTPLWF DIVGGNFDSS FDAEKGVGTI VIAKPLDAEQ RSVYNMSVEV TDGTNIAVTQ1440
 1441 VFIKVLDNND NGPEFSQPHY DVTISEDVLP DTEILQIEAT DRDEKHKLSY TIHSSIDAVS1500
 1501 MRKFRMDPST GVLYTAERLD HEAQDKHILN IMVRDQEFPY RRNLARVIVN VEDANDHSPY1560
 1561 FTNPLYEASV FESAALGSVV LQVTALDKDK GENAELIYSI EAGNTGNTFK IEPVLGIITI1620
 1621 SKEPDMAAMG QFVLSVKVTD QGSPPMSATA IVRISISMSD NSHPKFTHKD YQAEVNENVD1680
 1681 IGTSVILISA ISQSTLIYEV KDGNINGVFT INPYSGVITT RRALDYEHTS SYQLIIQATN1740
 1741 MAGMASNATI SVQIVDENDN PPVFLFSQYS GSLSEAAPIN SIVRSLDNSP LVIRATDADS1800
 1801 NQNALLVYQI VESTAKKFFT VDSSTGAIRT IANLDHEAIA HFHFHVHVRD SGNPQLTAES1860
 1861 PVEVNIEVTD VNDNPPVFTQ AVFETVLLLP TYIGVEVLKV SATDPDSEVP PELTYSLMEG1920
 1921 SVDNFLMDPN TGVLTIKNNN LSKDHYMLIV RVSDGKFYST AMVTVMVKEA MDSGLHFTQS1980
 1981 FYSTSISENS TNITKVAIVN AVGNRLNEPL KYSILNPGNK FKIKSTSGVI QTTGVPFDRE2040
 2041 EQELYELVVE ASRELDHLRV ARVVVRVNIE DVNDNSPVFV GLPYYAAVQV DAEPGTLIYR2100
 2101 VTAIDKDKGA NGEVTYVLQD DYGHFEINPN SGNVILREAF NSDLSNIDYG VTILAKDGGN2160
 2161 PSLSTFVELP ITIVNKAMPV FDKPFYTASI NEDITMNTPI LSINATSPEG QGIIYLIIDG2220
 2221 DPFQQFNIDF DTGVLKVISP LDYEVTSVYK LTVRASDALT GARAEVTVDL LVDDINDNPP2280
 2281 VFDQPTYNTT LSESSLIGTP VLQLVSTDAD SGNNKLVRYQ IVQDTYNSTD YFHIDSSSGL2340
 2341 ILTARMLDHE LVQHCTLKVT ATDNGFPSLS SEVLVQIYIS DVNDNPPVFN QLIYESYVSE2400
 2401 LAPRGHFVTC VQASDADSSD LDRLEYSILS GNDRASFLMD SKSGVLTLSS HRKQRMEPLY2460
 2461 SLNVSVSDGL FTSTAQVHIR VLGANLYSPA FSQSTYVAEV RENAASGTKV IHVRATDGDP2520
 2521 GTYGQVSYSI INDFAKDRFL IDSNGQIITT ERLDRENPLE GDISIYLRAL DGGGRTTFCT2580
 2581 VRVIVVDEND NAPQFMTVEY RASVRADVGR GHLVTQVQAL DPDDGANSRI TYSLYSEASV2640
 2641 SVADLLEIDP DNGWMVTKGN FNQLRNTVLS FFVKAVDGGI PVRHSLIPVY IHVLPPETFL2700
 2701 PSFTQSQYSF TITEDTSIGS TVDTLRILPN QSVRFSMVNG ERPENNKEGV FIIEQETGAI2760
 2761 KLDKRLDHEV SPAFHFKVAA TIPLDKVDIV FTVDVDVKVL DLNDNKPVFE TSTYETIIME2820
 2821 GMPVGTKLAQ VRAIDMDWGA NGQVTYSLHS DSHLEKVIEA FNIDSNTGWI STLKDLDHET2880
 2881 DPAFSFFVVA SDLGEAFSLS SMALVSVKVT DINDNAPVFA HEVYRGNVKE SDPPGEVVAV2940
 2941 LSTLDKDTSN INRQVSYHIT GGNPRGQFAL GMVQSEWKVY VKRPLDREEQ DIYFLNITAS3000
 3001 DGLFVTQAMV EVTVSDVNDN SPVCDQVAYS ASLPEDIPSN KIILKVSAKD ADIGSNGDIR3060
 3061 YSLYGSGNNE FFLDPESGEL KTLAVLDRER VPVYNLIARA TDGGGRFCSS SVLLLLEDVN3120
 3121 DNPPVFSSNH YTACVYENTA TKALLTRVQA MDPDVGINRK VVYSLEDSAS GVFSIDSSSG3180
 3181 VIVLEQPLDR EQQSSYNISV RATDQSPGQS LSSLASVTIT VLDINDNPPV FERRDYLVTV3240
 3241 PEDTSLGTQV LSVFATSKDI GTNAEITYLI RSGNEQGKFS INPKTGGISV LEALDYETCR3300
 3301 RFYLVVEAKD GGTPALSTAA TVSIDLTDVN DNPPRFSQDV YSAVISEDAL EGDSVILLIA3360
 3361 EDVDSKPNGQ IRFSIVGGDR DNEFAVDPIL GLVKVKKKLD RERVSGYSLL IQAVDSGIPA3420
 3421 MSSTTTVNID ISDVNDNSPV FTPANYTAVI QENKPVGTSI LQLVVTDRDS FHNGPPFSFS3480
 3481 ILSGNEDEEF MLDSHGILRS AVVFRHMESP EYLLCIQAKD SGKPQQVSHT YIRVRVIEES3540
 3541 THKPTAIPLE IFIVTMEDDF PGGVIGKIHA TDQDMYDVLT FALKSEQKSL FKVNSHDGKI3600
 3601 IALGGLDSGK YVLNVSVSDG RFQVPIDVVV HVEQLVHEML QNTVTIRFED VSPEDFVGLH3660
 3661 MHGFRRILRN AVLTQKQDSL RIISIQPVVG TNQLDMLFAV EMHSSEFYKP AYLIQKLSNA3720
 3721 RRHLENVMHI AAILEKNCSG LDCQEQHCEQ GLSLDSHALM TYSTARISFV CPRFYRNVRC3780
 3781 TCNGGVCPGS NDPCVEKPCP EDMQCVGYEA SRRPFLCQCP PGKLGECSGH TSLSFAGNSY3840
 3841 IKYRLSENSK EEDFKLALRL RTLQSNGIIM YTRANPCMIL KIVEGKLWFQ LDCGSGPGIL3900
 3901 GISSRAVNDG SWHSVFLELN RNFTSLALDD SYVERRRAPL YFQTLSTDSA IFFGALVQAD3960
 3961 NVRSLTDTRV TQVLGGFQGC LDSVVLNHYE LPLQNKRSSF AEVVGLTELK LGCVLYPDAC4020
 4021 QRSPCLHGGS CSSLPSGGYQ CSCLSQFTGT NCESEITACF PNPCRNGGSC DPIGNTFVCS4080
 4081 CKAGLTGVTC EDDVDECERE ECENGGSCVN LFGSFFCNCT PGYVGQYCGL RPVVVPNIQA4140
 4141 GHSYVGKEEL IGIAVVLFVI FTLIVLFIVF RKKVFRKNYS RNNITLVQDP ATAALLHKSN4200
 4201 GIPFRSLRAG DGRNVYQEVG PPQVPVRPMA YTPCFQSDSR SNLDKGLDVL GGEPQEMSTF4260
 4261 HPESPRILTA RRGVVVCSVA PNLPAVSPCR SDCDSIRKNG WDTGSENKGT EDTGEVTCFT4320
 4321 NSNKGSNSEV QSLSSFQSDS GDDNAYHWDT SDWMPGARLS DIEEMPNYES QDGGAAHQGS4380
 4381 TRELESDYYL GGYDIDSEYP PPHEEEFLSR DQLPPPLPED FPDQYEALPP SQPTSLTSTM4440
 4441 SPDCRRRPRF HPSQYLPPHP LPGETDLGGP SSSCDFSTFA VNMNQGTEVM APTDSVSLSL4500
 4501 HNSRGTSSSE MSARCGFDDS EVAMSDYESA GELSLTNLHI PFVETQQQTQ V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle