YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|124486775, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.51
Transmembrane Helix	35	59	0.87
Non-Cytoplasmic	60	66	0.57
Transmembrane Helix	67	89	0.92
Cytoplasmic	90	183	0.75
Transmembrane Helix	184	202	0.92
Non-Cytoplasmic	203	222	0.88
Transmembrane Helix	223	246	0.92
Cytoplasmic	247	296	0.94
Transmembrane Helix	297	316	0.92
Non-Cytoplasmic	317	333	0.87
Transmembrane Helix	334	356	0.91
Cytoplasmic	357	367	0.87
Transmembrane Helix	368	389	0.81
Non-Cytoplasmic	390	492	0.82
Transmembrane Helix	493	516	0.73
Cytoplasmic	517	527	0.68
Transmembrane Helix	528	550	0.61
Non-Cytoplasmic	551	585	0.81
Transmembrane Helix	586	603	0.81
Cytoplasmic	604	650	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLMALTWAY VSKSLSGTYM VSMLTQIERQ FDIPASIAGL ISGSFGIGNL LLIVFVNYFG  60
   61 MQLHRPIIIG VGCATMGLGC FLISLPHFLM GIYEYETMIS PASNLPSNSF LCVENRSQTL 120
  121 KPTQDPAECV KEIKSSMWIY VLVGNIIRGI GETPLLPLGV SYIEDFAKSE NSPLYIGILE 180
  181 TGKMFGPVIG LLLGSFCASI YVDTGSVNTD DLTITPTDTR WVGAWWIGFL VCAGVNVLTS 240
  241 IPFFFFPKTL PEEGLQDNGD GTENDKEEKH REKAKEENRG ITKDFFPFMK SLSCDPIYVL 300
  301 FILISVLQIS TFTSTFNFLS KYLEQQFGKS TAEVVFFIGL YTLPTICIGY LIAGFIMKKF 360
  361 KITVKKAAYL AFCLSLCEYL FGFCNFLIAC DNVPVSGLTI SYEGVQHPLY VENNVLADCN 420
  421 TRCSCLTKTW DPVCGDNGLS FMSACHTGCE KSVGTGINMV FQNCSCIGSS GKPSAVLGLR 480
  481 EKGPECANKL QHLLILSVFL SVIYSLSATP GYTVLLRCVE SEEKSPGVGI HTFCTRVFGG 540
  541 IPAPVYIGAL LDRTCLHWGT QKCGEPGACR MYDINSFRSI YLGLPAALRG ISYLPAFIIV 600
  601 ILIRKFCLPG EINSSEMEIA EMKLAEMESE CTDAHRSHKF KSDGELKTKL