YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FLVC1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	100	0.99
Transmembrane Helix	101	121	0.93
Non-Cytoplasmic	122	136	0.96
Transmembrane Helix	137	160	0.85
Cytoplasmic	161	167	0.75
Transmembrane Helix	168	186	0.85
Non-Cytoplasmic	187	195	0.64
Transmembrane Helix	196	222	0.76
Cytoplasmic	223	233	0.68
Transmembrane Helix	234	253	0.82
Non-Cytoplasmic	254	280	0.87
Transmembrane Helix	281	301	0.92
Cytoplasmic	302	336	0.96
Transmembrane Helix	337	357	0.91
Non-Cytoplasmic	358	377	0.81
Transmembrane Helix	378	397	0.97
Cytoplasmic	398	406	0.82
Transmembrane Helix	407	425	0.93
Non-Cytoplasmic	426	429	0.57
Transmembrane Helix	430	452	0.84
Cytoplasmic	453	467	0.75
Transmembrane Helix	468	489	0.87
Non-Cytoplasmic	490	497	0.86
Transmembrane Helix	498	517	0.95
Cytoplasmic	518	560	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARPDDEVGP AVAPGHPLGK GYLPVPKGAP DGEARLVPQN GPEALNGGPG LGPLIAGAQG  60
   61 GPQALIAAEE ETQARLLPAG DGEDVPCPAC PPRTALSPRR FVVLLIFSLY SLVNAFQWIQ 120
  121 YSSISNVFED FYEVSPLHIN WLSMVYMVAY VPLIFPATWL LDTRGLRLTA LLGSGLNCLG 180
  181 AWVKCGSVQR HLFWVTMLGQ ILCSVAQVFI LGLPSPVASV WFGPKEVSTA CATAVLGNQL 240
  241 GTAVGFLLPP VLVPALGTQN STGLLAHTQN NTDLLAHNIN TMFYGTAFIS TFLFFLTIIA 300
  301 FKEKPPLPPS QAQAVLRDSP PEEYSYKSSI WNLCRNIPFV LLLVSYGIMT GAFYSISTLL 360
  361 NQIILTYYVG EEVNAGRIGL TLVVAGMVGS ILCGLWLDYT KTYKQTTLIV YVLSFIGMLI 420
  421 FTFTLNLGYI IVVFFTGGIL GFFMTGYLPL GFEFAVEITY PESEGMSSGL LNTAAQILGI 480
  481 FFTLAQGKIT TDYNSPEAGN IFLCAWMFVG IILTALIKSD LRRHNINTGL TNIDVKAVPV 540
  541 DSRVDPKPKV MVSIQSESSL