YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84380268
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMKKKNVYL YIPNIIGYIR VILALLGFII SRKNLFLFVC FYSVSQVLDA LDGWTARKFN  60
   61 QTSVFGQILD QITDRLSTSL LYLLNSSVYE EYITLIGLIM IADIAGHYFH STSCAIAGNK 120
  121 THKKIEKGNK LLKLYYEKPW VMVICIIAYE SFLICAYLLR VAVKKSLIYK LSYYALICSF 180
  181 PLAAFKMFTN VSQGVHGVKC LVDMDCKKK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	30	0.88
Non-Cytoplasmic	31	139	0.61
Transmembrane Helix	140	161	0.84
Cytoplasmic	162	166	0.50
Transmembrane Helix	167	188	0.70
Non-Cytoplasmic	189	209	0.53