YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|86439731
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.88
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRSCALAL LVSLACAALL VAPCRCVNEQ GRALLDWRRS LRPTGGALDS WRASDASPCR  60
   61 WLGVSCDARG AVTSLSVTGV DLRGPLPANL LPLAPSLTTL VLSGTNLTGP IPPEIGGYGE 120
  121 LVTLDLSKNQ LTGAIPPELC RLAKLETLAL NSNSLCGAIP DDLGDLASLT HVTLYDNELS 180
  181 GTIPASIGRL KKLQVIRAGG NQALKGPLPK EIGGCADLTM IGLAETGMSG SLPETIGQLK 240
  241 KIQTIAIYTT MLSGGIPESI GNCTELTSLY LYQNSLSGAI PPQLGRLRKL QSLLLWQNQL 300
  301 VGAIPPELGQ CEELTLIDLS LNSLSGSIPA TLGRLPNLQQ LQLSTNRLTG VIPPELSNCT 360
  361 SLTDIELDNN ALSGEIRLDF PKLGNLTLFY AWKNGLTGGV PASLAECASL QSVDLSYNNL 420
  421 TGPIPKELFG LQNLTKLLLL SNELSGVVPP DIGNCTNLYR LRLNGNRLSG TIPPEIGNLK 480
  481 NLNFLDMSEN HLVGPVPAAI SGCASLEFLD LHSNALSGAL PAALPRSLQL VDVSDNQLSG 540
  541 QLRSSVASMP ELTKLYLAKN RLTGGIPPEL GSCEKLQLLD LGDNAFSGGI PAELGALQSL 600
  601 EISLNLSCNR LSGEIPPQFA GLDKLGSLDL SHNGLSGSLD PLAALQNLVT LNISYNAFSG 660
  661 ELPNTPFFQK LPLSDLAGNR HLVVSDGSDE SSGRGALTTL KIAMSVLAVV SAAFLVAATY 720
  721 MLARARLGGR SSAPVDGHGT WEVTLYQKLD ISMDDVLRGL TSANVIGTGS SGVVYRVDTP 780
  781 NGYTIAVKKM WSPDEASAGL AFRSEIAALG SIRHRNIVRL LGWAANGGSS TRLLFYSYLP 840
  841 NGNLSGLLHG GVVGGTKGAP TAEWGARYDV ALGVAHAVAY LHHDCVPAIL HGDIKSMNVL 900
  901 LGPAYEPYLA DFGLARILSS GQSKLDDSSS KPQRIAGSYG YMAPEYASMQ RISEKSDVYS 960
  961 FGVVLLEVLT GRHPLDPTLP GGAHLVQWVQ AKRGSDDEIL DARLRESAGE ADAHEMRQVL1020
 1021 AVAALCVSRR ADDRPAMKDV VALLEEIRRP AAADDAKPPR PATTLPSAAA APMLSPARGG1080
 1081 ARSVGDSFAV SDYSA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle