YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCG1_PIG
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTKALKVR VTLFCILVGI VLALVAVVTD HWAVLSPHVE HLNATCEAAH FGLWRICTKR  60
   61 IAVGDSKDKS CGPITLPGEK NCSYFRHFNP GETSEIFHVT TQKEYSISAA AIAIFSLGFI 120
  121 ILGTICGLLS FRKKRDYLLR PASMFYAFAG LCIFVSVEVM RQSVKRMIDS EDTVWIDYYY 180
  181 GWSFACACAA FILLFLGGIA LLLFSLPRMP QYPWESCMDA EPEH

Type	Start	End	Confidence
Cytoplasmic	1	10	0.82
Transmembrane Helix	11	33	0.82
Non-Cytoplasmic	34	106	0.99
Transmembrane Helix	107	131	0.89
Cytoplasmic	132	141	0.76
Transmembrane Helix	142	160	0.92
Non-Cytoplasmic	161	180	0.91
Transmembrane Helix	181	204	0.94
Cytoplasmic	205	224	0.96