YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84372313, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	30	0.84
Non-Cytoplasmic	31	45	0.80
Transmembrane Helix	46	69	0.77
Cytoplasmic	70	89	0.79
Transmembrane Helix	90	110	0.88
Non-Cytoplasmic	111	119	0.83
Transmembrane Helix	120	143	0.85
Cytoplasmic	144	156	0.78
Transmembrane Helix	157	176	0.81
Non-Cytoplasmic	177	179	0.57
Transmembrane Helix	180	203	0.79
Cytoplasmic	204	222	0.87
Transmembrane Helix	223	255	0.71
Non-Cytoplasmic	256	272	0.74
Transmembrane Helix	273	295	0.84
Cytoplasmic	296	310	0.91
Transmembrane Helix	311	335	0.89
Non-Cytoplasmic	336	344	0.73
Transmembrane Helix	345	366	0.90
Cytoplasmic	367	373	0.87
Transmembrane Helix	374	394	0.91
Non-Cytoplasmic	395	399	0.78
Transmembrane Helix	400	422	0.92
Cytoplasmic	423	430	0.87
Transmembrane Helix	431	451	0.92
Non-Cytoplasmic	452	455	0.78
Transmembrane Helix	456	476	0.94
Cytoplasmic	477	516	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANKVLKSSF ILLIGNLLFR VGGYINRLLM SRMLGPEGYG LYGLTLPFQG IFQILSAGGL  60
   61 PPAISKYVAQ YNAKDEKALS RQIIITSTKF MILMAILLSI VLLFSSDFIA NNIFRKPLVV 120
  121 WPLRAVCLIT PFSVVVGSMR GAFQGTYKNE YTVYNRMAEQ VSTIVFACIF VYFGMYAMGA 180
  181 VLGSAFGFII SAITAVFLYK KYIDPIFKTE DSLDLTFHEE LSLLWKLICF AIPVAITALS 240
  241 EMAIYDVGTI IIGIFMLSTD VGYYNAADPI SRIPLIISLS ISTVLLPAAS EAYALGNRSL 300
  301 LQEYVVDCLR YGILTVVPMC ILISVFSCPI LIILFGHTYI PSSDVLSILV IGMSFYSIYM 360
  361 ICSSILQGTG QPKLPMYILI VGIIMNITLN VLFVKSIGIV GAAIATTIAT CILMIVILYC 420
  421 VIRNTRISIP WKNILMIIIS NIILTIACII IPKTIIGSII GCVVGCVIYV LSLILLRALS 480
  481 KRDIDFFTAY LYKIKFIKPY IEKIVKFIEK HDLIYK