YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RUS1_RAT
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTASLRAP LCTEQFGSGA PRSCSAAADG SLQWDRAQRW GWFSRASITK PGQHEGGGRG  60
   61 PWAALTTLSG LRSVLLPQGF PDSVSPDYLQ YQLWDSVQAF ASSLSGSLAT QAVLQGLGVG 120
  121 NAKASVSAAT STWLVKDSTG MLGRIIFAWW KGSKLDCNAK QWRLFADILN DTAMFLEIMA 180
  181 PMYPIFFTMT VSTSNLAKCI VGVAGGATRA ALTMHQARRN NMADVSAKDS SQETVVNLAG 240
  241 LLVSLLMLPL VSDCLSLSLG CFILLTALHI YANYRAVRAL VLETLNESRL QLVLKHFLQR 300
  301 GEVLEPASAN QMEPLWTGFW PSLSLSLGVP LHHLVSSVSE LKQLVEGHQE PYLLCWNQSQ 360
  361 NQVQVALSQV AGPETVLRAA THGLILGALQ EDGPLPGELA ELRDMVQAGP KNESWILVRE 420
  421 THQVLDTLFP KFLKGLQAAG WKTEKHHLEV DEWRATWPLS PEKKVL

Type	Start	End	Confidence
Cytoplasmic	1	172	0.68
Transmembrane Helix	173	207	0.47
Non-Cytoplasmic	208	244	0.59
Transmembrane Helix	245	272	0.73
Cytoplasmic	273	315	0.66
Transmembrane Helix	316	335	0.51
Non-Cytoplasmic	336	466	0.52