YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|83405563
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSKEPRLQ QLGLLEEEQL RGLGFRQTRG YKSLAGCLGH GPLVLQLLSF TLLAGLLVQV  60
   61 SKVPSSISQE QSRQDAIYQN LTQLKAAVGE LSEKSKLQEI YQELTQLKAA VGELPEKSKL 120
  121 QEIYQELTRL KAAVGELPEK SKLQEIYQEL TWLKAAVGEL PEKSKLQEIY QELTRLKAAV 180
  181 GELPEKSKLQ EIYQELTELK AAVGELPEKS KLQEIYQELT QLKAAVGELP DQSKQQQIYQ 240
  241 ELTDLKTAFE RLCRHCPKDW TFFQGNCYFM SNSQRNWHDS VTACQEVRAQ LVVIKTAEEQ 300
  301 NFLQLQTSRS NRFSWMGLSD LNQEGTWQWV DGSPLSPSFQ RYWNSGEPNN SGNEDCAEFS 360
  361 GSGWNDNRCD VDNYWICKKP AACFRDE

Type	Start	End	Confidence
Cytoplasmic	1	35	0.82
Transmembrane Helix	36	58	0.78
Non-Cytoplasmic	59	387	0.99