YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ABHDD_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKPWRLWGP LEACLLSVCA WSWGFCRVSL LALILTFHLY GGFVLLGLIL ASLAGILYKF  60
   61 QDVLLYFPDQ PSSSRLYVPM PTGIPHENVY IRTKDGIRLN LILLRYTGEN PAGAPTILYF 120
  121 HGNAGNIGHR VPNALLMLVN LKANVVLVDY RGYGKSEGDP SEDGLYQDAE ATLDYVMTRP 180
  181 DIDKTKVVLF GRSLGGAVAI RLASCNPHRV AAIMVENTFL SIPHMAATLF SFFPMRYLPL 240
  241 WCYKNKFLSY RHVVPCRMPS LFISGLSDQL IPPVMMKQLY ELSPSRTKRL AIFPEGTHND 300
  301 TWQCQGYFSA LEQFMKELLK SHAREETTQG TASVTII

Type	Start	End	Confidence
Cytoplasmic	1	6	0.76
Transmembrane Helix	7	31	0.76
Non-Cytoplasmic	32	35	0.46
Transmembrane Helix	36	58	0.87
Cytoplasmic	59	187	0.74
Transmembrane Helix	188	205	0.35
Non-Cytoplasmic	206	219	0.51
Transmembrane Helix	220	238	0.52
Cytoplasmic	239	337	0.58