YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22AC_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.74
Transmembrane Helix	16	33	0.73
Non-Cytoplasmic	34	146	0.92
Transmembrane Helix	147	166	0.88
Cytoplasmic	167	175	0.83
Transmembrane Helix	176	196	0.91
Non-Cytoplasmic	197	200	0.75
Transmembrane Helix	201	222	0.89
Cytoplasmic	223	231	0.78
Transmembrane Helix	232	253	0.89
Non-Cytoplasmic	254	259	0.78
Transmembrane Helix	260	279	0.93
Cytoplasmic	280	345	0.98
Transmembrane Helix	346	369	0.85
Non-Cytoplasmic	370	377	0.72
Transmembrane Helix	378	397	0.87
Cytoplasmic	398	406	0.75
Transmembrane Helix	407	426	0.85
Non-Cytoplasmic	427	434	0.65
Transmembrane Helix	435	456	0.90
Cytoplasmic	457	462	0.68
Transmembrane Helix	463	486	0.67
Non-Cytoplasmic	487	493	0.54
Transmembrane Helix	494	515	0.87
Cytoplasmic	516	553	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFPELLDRV GGRGRFQLLQ AVALVTPILW VTTQNMLENF SAAVPHHRCW VPLLDNSTSQ  60
   61 ASIPGDFGRD VLLAVSIPPG PDQRPHQCLR FRQPQWQLIE SNTTATNWSD ADTEPCEDGW 120
  121 VYDHSTFRST IVTTWDLVCD SQALRPMAQS IFLAGILVGA AVCGHASDRF GRRRVLTWSY 180
  181 LLVSVSGTIA ALMPTFPLYC LFRFLVASAV AGVMMNTASL LMEWTSAQAG PLMMTLNALG 240
  241 FSFGQVLTGS VAYGVRSWRM LQLAVSAPFF LFFVYSWWLP ESARWLITVG RLDQSLRELQ 300
  301 RVAAVNRRKA EADTLTVEVL RSAMQEEPNG NQAGARLGTL LHTPGLRLRT FISMLCWFAF 360
  361 GFTFYGLALD LQALGSNIFL LQALIGIVDL PVKMGSLLLL SRLGRRLCQA SSLVLPGLCI 420
  421 LANILVPREM GILRSSLAVL GLGSLGAAFT CVTIFSSELF PTVIRMTAVG LGQVAARGGA 480
  481 MLGPLVRLLG VYGSWLPLLV YGVVPVLSGL AALLLPETKN LPLPDTIQDI QKQSVKKVTH 540
  541 DIAGGSVLKS ARL