YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76096342, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQTLYDYFW WERLWLPVNL TWADLEDKDG RVYAKASDLY ITLPLALLFL IIRYFFELYV  60
   61 ATPLAALLNV KEKTRLRAPP NATLEHFYLT VGKQPKQSGL SGRQVERWFR RRRNQDRPSL 120
  121 LKKFREASWR FTYYLIAFVA GMAVTVDKPW FYDLRKVWEG YPIQSIIPSQ YWYYMIELAF 180
  181 YWSLLFSIAS DVKRKDFKEQ IIHHVATIIL LCFSWFANYV RAGTLIMALH DSSDYLLESA 240
  241 KMFNYAGWKN TCNNLFIVFA VVFIITRLVI MPFWILHCTM IYPLEFYPAF FGYYFFNSMM 300
  301 VVLQMLHVFW AYFIVRMAHK FITGKELGRS QIRDVESERP SSWGRDPQSE EESSSREAAL 360
  361 CIQWLHSSTA VPCLPHCPLH SCNPK

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.51
Transmembrane Helix	40	56	0.48
Cytoplasmic	57	130	0.78
Transmembrane Helix	131	151	0.90
Non-Cytoplasmic	152	170	0.81
Transmembrane Helix	171	190	0.90
Cytoplasmic	191	200	0.75
Transmembrane Helix	201	220	0.78
Non-Cytoplasmic	221	251	0.54
Transmembrane Helix	252	278	0.79
Cytoplasmic	279	289	0.40
Transmembrane Helix	290	314	0.84
Non-Cytoplasmic	315	385	0.44