YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PARL_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALYSWVQRG WRCGQTWAPL LGGGYRELSA TQARQLLGRR FNLLLQQKCG FRKAPRKVEP  60
   61 RRSDTGSSGE AYKRSALIPP LEETVFYPSP YPVRTLLKPF FFTVGFTGCA FGSAAIWQYE 120
  121 SLKSRVQSYF DGIKADWLDS IRPQKEGNLR KEINKWWNSL SDGQRTVTGI IAANALVFCL 180
  181 WRVPSLHRTM IRYFTSNPAS KVLCSPMLLS TFSHFSLFHM AANMYVLWSF STSIVNILGQ 240
  241 EQFVAVYLSA GVISNFVSYV CKVATGRYGP SLGASGAIMT VLAAVCTKIP EGRLAIIFLP 300
  301 VFTFTAGNAL KAIIAMDTAG MILGWKFFDH AAHLGGALFG IWYITYGHEL IWKNREPLVK 360
  361 IWHEIRTNGP KKGGGSK

Type	Start	End	Confidence
Cytoplasmic	1	98	0.95
Transmembrane Helix	99	119	0.90
Non-Cytoplasmic	120	165	0.94
Transmembrane Helix	166	184	0.94
Cytoplasmic	185	201	0.86
Transmembrane Helix	202	222	0.82
Non-Cytoplasmic	223	265	0.57
Transmembrane Helix	266	287	0.69
Cytoplasmic	288	293	0.59
Transmembrane Helix	294	315	0.85
Non-Cytoplasmic	316	329	0.60
Transmembrane Helix	330	347	0.90
Cytoplasmic	348	377	0.70