YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S2538_RAT
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.30
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVSAEPRSL SVARAGLASP VIEKARSALL PSQDVEDTVE TLMLHPVIKA FLCGSISGTC  60
   61 STLLFQPLDL LKTRLQTLQP SDVGPRRVGM LSVFLKVVRT ETLLGLWKGM SPSIVRCVPG 120
  121 VGIYFGTLYS SKQYFLRGHP PTALESVILG MGSRSVAGVC MSPITVVKTR YESGAYSYES 180
  181 VYAALRSIYC SEGSRGLFRG LTATLLRDAP FSGLYLMFYS QTRATVLHGA DELDAALMPL 240
  241 VNFSCGVFAG ILASLVTQPA DVIKTHMQLS TVKCQCIGQV ATLILKTHGL RGFFHGSVPR 300
  301 ALRRTLMAAM AWTVYEEMMA KMGLKS

Type	Start	End	Confidence
Cytoplasmic	1	111	0.49
Transmembrane Helix	112	126	0.30
Non-Cytoplasmic	127	326	0.54